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Additional resources for Chemical Reactions Their Theory and Mechanism
I remember being mystified by thermodynamics, then enchanted and inspired by quantum mechanics and spectroscopy. You may find the reverse to be true, or you may not be much taken with any of it. ). ” You already know a fair amount about the atomic part of this: even high school chemistry students learn about s, p, and d orbitals, and how filling shells of electrons helps to explain how the periodic table works. Quantum mechanics (as it was developed from about 1915 to 1935) provides a real mathematical framework that can explain and predict both these orbital patterns in atoms and the ways in which chemical bonds are formed to make molecules.
These biochemical simulations are an extension of methods that have been used for simple liquids since automatic computation became generally available, and several introductory books give a good description of techniques and results in this field. , a biopolymer in solution), Fi = −(∂U / ∂xi ) = mi (d 2 xi / dt 2 ), are integrated numerically. From the solution of these equations, the atomic positions and velocities as a function of time are obtained (here, mi and xi represent the mass and position of particle i, and U is the potential energy surface, which depends on the positions of the particles in the system).
Recent advances in our understanding of the nature of chemical reactions in condensed phases, along with an improved ability to carry out realistic computer simulations of macromolecules, have led to new theoretical insights into a variety of biochemical events. These have been coupled to corresponding improvements in experimental techniques for detecting reaction intermediates and in the use of new biotechnology, such as site-directed mutagenesis, for manipulating proteins in powerful new ways.